Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs6822592 chr4:140268141 T/G 1.93E-5 509 20.78 26.72 18.2 KM Plot
HNSC rs6848950 chr4:140264431 T/G 1.93E-5 509 20.78 26.72 18.2 KM Plot
HNSC rs6856276 chr4:140271806 A/T 2.07E-5 508 20.78 26.72 18.25 KM Plot
HNSC rs6924112 chr6:155583620 G/C 4.6E-5 512 24.15 25.3 15.93 KM Plot
HNSC rs7087731 chr10:111672028 C/A 3.74E-5 508 27.23 22.02 16.63 KM Plot
HNSC rs7108731 chr11:59485859 C/G 1.8E-6 515 21.5 21.93 3.17 KM Plot
HNSC rs71106653 chr15:31228605 CAAG/C 5.55E-7 507 22.9 18.8 9.43 KM Plot
HNSC rs71420529 chr15:31225932 GATTATA/G 4.26E-7 511 22.22 20.68 9.43 KM Plot
HNSC rs71474639 chr15:31213257 A/G 5.67E-7 514 22.78 19.3 10.6 KM Plot
HNSC rs71706300 chr13:20369106 CAGAGAG/C 4.43E-5 514 26.3 16.23 22.82 KM Plot
HNSC rs724971 chr6:15271364 T/C 1.58E-5 510 22.2 21.1 9.37 KM Plot
HNSC rs72497432 chr15:31221757 ATATAT/A 1.17E-6 510 22.7 20.28 10.6 KM Plot
HNSC rs72659611 chr1:35844449 C/T 8.56E-14 511 21.27 33.1 3.02 KM Plot
HNSC rs72659622 chr1:35996619 G/A 8.71E-6 507 21.37 26.37 3.37 KM Plot
HNSC rs72659656 chr1:36176131 G/A 9.1E-15 509 21.47 27.03 3.02 KM Plot